Current projects

Title Project period Project funding
Spatial network model of sequence and structure diversity of Human genome at a population scale 2020 - 2024 PRELUDIUM BIS 1, NCN
Multiscale spatial reorganization of chromatin in response to replication stress and its role in cellular protection against genomic instability 2021 - 2025 OPUS 19, NCN

Previous projects

Title Project period Project funding
Three-dimensional Human Genome structure at the population scale: computational algorithm and experimental validation for lymphoblastoid cell lines of selected families from 1000 Genomes 2017 - 2020 TEAM, FNP
iCell: information processing in living organisms. The role of three-dimensional structure and multi-scale properties in controlling the biological processes in a cell. 2015 - 2019 OPUS, NCN
Virtual High Throughput Screening (vHTS) derivation of a cross-immunity model for the Influenza-A Virus Infections 2014 - 2017 OPUS, NCN
Analysis of mechanisms of drug resistance to trastuzumab in HER2 overexpressing breast cancer based on gene expression changes in selected cell lines 2016 - 2019 PRELUDIUM, NCN
Contacts of structural chromatin domains investigated by GAM method. A scientific internship at the laboratory of Professor Ana Pombo in Berlin. 2019 - 2019 MINIATURA, NCN
Identification of structural variants in human genome using long-read Next Generation Sequencing with the Oxford Nanopore technology 2018 - 2019 MINIATURA, NCN
Co-financing of the internship at the 4D Nucleome Center at the Jackson Laboratory for Genomic Medicine 2019 - 2019 MINIATURA, NCN
Genome-wide chromatin interactions in the mouse brain in vivo – establishment and validation of Hi-C protocol 2018 - 2019 DSM, Polish Ministry of Science and Higher Education
Modeling and analysis of the spatial structure and dynamics of chromatin in the cell nucleus 2016 - 2017 ETIUDA, NCN
Methods of integrating multi-scale biological information in artificial learning systems 2015 - 2016 ETIUDA, NCN
Performing cohesin HiChIP experiments for mother–father–child trio from 1000 Genome Project 2018 - 2018 Boehringer Ingelheim Fonds, research visit
Ebola 2019 - 2020 EDCTP
Optimisation of HiChIP method to generate high-resolution map of chromatin contacts mediated by cohesin in the human genome 2020 - 2021 MINIATURA 4, NCN
Genome-wide analysis of DNA double-strand breaks sites in the context of human inter-individual variability and the higher order chromatin organization 2020 - 2021 MINIATURA 4, NCN
The (MSCA)-ITN the Innovative Training Networks program ENHPATHY 2020 - 2023 H2020
HPC facility 2021 - 2024 Polish Ministry of Science and Higher Education
Bat Coronaviruses as an emerging threat for human population 2020 - 2022 IDUB WUT
A complex programme of support for UW PhD students - Travel grant 2022 - 2022 IDUB UW